V 2.3
Institute of Plant Sciences - Laboratory of Plant Biotechnology

plprot - rice etioplast database

All data in the plprot rice etioplast database are based on shotgun protein identification by 1-D PAGE liquid chromatography tandem mass spectrometry (LC-MS/MS). Raw data were interpreted by the SEQUEST software and searched against the TIGR rice database (http://www.tigr.org/tdb/e2k1/osa1) download May 2004. For details see Zychlinski v. et al. (Molecular and Cellular Proteomics, 4:1072-1084, 2005).

Please enter a keyword and select the field(s) to search in and the option to display the data:
  • - TIGR gene ID: temporary gene ID from the TIGR rice database.
  • - Protein description: protein annotation from the TIGR rice database.
  • - Sequence: predicted amino acid sequence from the TIGR rice database.
  • - TargetP prediction: subcellular localization predicted by the TargetP program (http://www.cbs.dtu.dk/services/TargetP).
  • - Functional category: all protein identifications were assigned to their main functional category such as carbohydrate metabolism, amino acid metabolism, gene expression etc.
  • - The display option "all data" includes homologies to Arabidopsis thaliana proteins and homologies to proteins that were identified in different proteome analyses of the Arabidopsis chloroplast (Peltier et al. 2002, 2004, Schubert et al. 2002, Ferro et al. 2003, Froehlich et al. 2003, Kleffmann et al. 2004) and that were predicted to localized to the plastid by an in situ analysis (Koo and Ohlrogge 2002).

Search keyword
Search in fields All fields TIGR gene ID Protein description Sequence TargetP prediction Functional category
Display options All data Basic data Only TIGR gene ID, Protein description and sequence

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