V 2.3
Institute of Plant Sciences - Laboratory of Plant Biotechnology

plprot - a plastid protein database-integrates data from large scale proteome analyses of different plastid types.These include etioplasts, chloroplasts, chromoplasts and the undifferentiated proplastid-like organelles of tobacco BY2 cells. This comparison allows establishing a core proteome that is common to all plastid types and provides furthermore information about plastid type-specific functions.

Proplastid Etioplast Chloroplast Chromoplast
Proplastid Etioplast Chloroplast Chromoplast

Etioplast to Chloroplast conversion
Etioplast to Chloroplast conversion

Tools for proteome data integration

Select database to search in

Please cite the following references:
  • Kleffmann T, Hirsch-Hoffmann M, Gruissem W, Baginsky S. 2006. plprot: a comprehensive proteome database for different plastid types. Plant Cell Physiol. 47, 432-6. [Link]

Database contains information from:
  • Kleffmann, T., Zychlinski, A., Russenberger, D., Hirsch-Hoffmann, M., Gehrig, P., Gruissem, W. and Baginsky, S. (2007). Proteome dynamics during plastid differentiation in rice (Oryza sativa L.). Plant Physiol, 2007 143: 912-923. [Link]
  • Siddique, M.A., Grossmann, J., Gruissem, W. and Baginsky, S (2006). Proteome analysis of bell pepper (Capsicum annuum L.) chromoplasts. Plant Cell Physiol., 2006 47: 1663-1673. [Link]
  • Baginsky, S., Grossmann, J. and Gruissem, W. (2007). Proteome analysis of chloroplast mRNA processing and degradation. Journal of Proteome Research, 2007 Feb;6(2):809-820. [Link]
  • Peltier JB, Cai Y, Sun Q, Zabrouskov V, Giacomelli L, Rudella A, Ytterberg AJ, Rutschow H, van Wijk KJ. 2005. The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. Mol Cell Proteomics. 5, 114-33. [Link]
  • von Zychlinski, A., Kleffmann, T., Krishnamurthy, N., Sjolander, K., Baginsky, S. and Gruissem, W. (2005). Proteome analysis of the rice etioplast: metabolic and regulatory networks and novel protein functions. Molecular and Cellular Proteomics, 4:1072-1084, 2005. [Link]
  • Baginsky, S., Kleffmann, T., von Zychlinski, A and Gruissem, W. (2005). Analysis of shotgun proteomics and RNA profiling data from Arabidopsis thaliana chloroplasts. Journal of Proteome Research 4, 637-640. [Link]
  • Kleffmann, T., Russenberger, D., von Zychlinski, A., Christopher, W., Sjolander, K., Gruissem, W. and Baginsky, S. (2004). The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. Current Biology 14, 354-362. [Link]
  • Baginsky, S., Siddique, A. and Gruissem, W. (2004). Proteome analysis of tobacco bright yellow-2 (BY-2) cell culture plastids as a model for undifferentiated heterotrophic plastids. Journal of Proteome Research 3, 1128-1137. [Link]
  • Ferro, M., Salvi, D., Brugiere, S., Miras, S., Kowalski, S., Louwagie, M., Garin, J., Joyard, J., and Rolland, N. (2003). Proteomics of the Chloroplast Envelope Membranes from Arabidopsis thaliana. Mol Cell Proteomics 2, 325-345. [Link]
  • Froehlich, J.E., Wilkerson, C.G., Ray, W.K., McAndrew, R.S., Osteryoung, K.W., Gage, D.A., and Phinney, B.S. (2003). Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. J Proteome Res 2, 413-425. [Link]
  • Peltier, J.B., Emanuelsson, O., Kalume, D.E., Ytterberg, J., Friso, G., Rudella, A., Liberles, D.A., Soderberg, L., Roepstorff, P., von Heijne, G., and van Wijk, K.J. (2002). Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. Plant Cell 14, 211-236. [Link]
  • Peltier, J.B., Ytterberg, A.J., Sun, Q., and Van Wijk, K.J. (2004). New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast and versatile fractionation strategy. J Biol Chem. 279, 49367 - 49383 [Link]
  • Schubert, M., Petersson, U.A., Haas, B.J., Funk, C., Schroder, W.P., and Kieselbach, T. (2002). Proteome map of the chloroplast lumen of Arabidopsis thaliana. J Biol Chem 277, 8354-8365. [Link]
  • Friso, G., Giacomelli, L., Ytterberg, A.J., Peltier, J.B., Rudella, A., Sun, Q. and Wijk, K.J. (2004) In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. Plant Cell, 16, 478-499 [Link]

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